PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G503000.1.p
Common NameSb01g046990, SORBIDRAFT_01g046990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 246aa    MW: 25678.4 Da    PI: 5.9595
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G503000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.5e-4071071100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp  +r++a+ ++ yeA+ar+rdP+yG+v++i++lqqq++
  Sobic.001G503000.1.p   7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVAHIFALQQQVM 95 
                           7*************************89************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l+a+la+lk++
  Sobic.001G503000.1.p  96 TLQAQLASLKAQ 107
                           *******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5746108IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-387105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD  60
RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAQAAQ GQQGVHEDAK  120
GYVGSAAAEQ LGYGYPWCNG NGGVAAAGTV GAPAAQLAGA YGNGGHESLT ALLGSSDYMQ  180
QSLYHAFEHA GADDDDGRQG NDAFEAAAES SSFGAEESGG WRSSSGYQDC EDLQSVAYAY  240
LNHRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0517320.0EF051732.1 Zea mays rootless concerning crown and seminal lateral roots (rtcs) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465851.11e-180hypothetical protein SORBIDRAFT_01g046990
TrEMBLC5WXW91e-180C5WXW9_SORBI; Putative uncharacterized protein Sb01g046990
STRINGSb01g046990.11e-179(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-56LBD family protein